Lohmueller, Kirk: search on Z-Library

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1

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

Pollinger, John P., Lohmueller, Kirk E., Han, Eunjung, vonHoldt, Bridgett M., Parker, Heidi G., Quignon, Pascale, Degenhardt, Jeremiah D., Boyko, Adam R., Earl, Dent A., Auton, Adam

Journal:

Year:

2010

Language:

english

File:

PDF, 359 KB

english, 2010

2

Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping

Adam B Olshen, Bert Gold, Kirk E Lohmueller, Jeffery P Struewing, Jaya Satagopan, Stefan A Stefanov, Eleazar Eskin, Tomas Kirchhoff, James A Lautenberger, Robert J Klein, Eitan Friedman, Larry Norton,

Journal:

Year:

2008

Language:

english

File:

PDF, 666 KB

english, 2008

3

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

Boyko, Adam R., Quignon, Pascale, Li, Lin, Schoenebeck, Jeffrey J., Degenhardt, Jeremiah D., Lohmueller, Kirk E., Zhao, Keyan, Brisbin, Abra, Parker, Heidi G., vonHoldt, Bridgett M., Cargill, Michele,

Journal:

Year:

2010

Language:

english

File:

PDF, 1.10 MB

english, 2010

4

Validation of probabilistic genotyping software for use in forensic DNA casework: Definitions and illustrations

Haned, Hinda, Gill, Peter, Lohmueller, Kirk, Inman, Keith, Rudin, Norah

Journal:

Science & Justice

Year:

2015

Language:

english

File:

PDF, 270 KB

english, 2015

5

Evolutionary History, Selective Sweeps, and Deleterious Variation in the Dog

Freedman, Adam H., Lohmueller, Kirk E., Wayne, Robert K.

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

6

Selection and Reduced Population Size Cannot Explain Higher Amounts of Neandertal Ancestry in East Asian than in European Human Populations

Kim, Bernard Y., Lohmueller, Kirk E.

Journal:

The American Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 1017 KB

english, 2015

7

Gene expression drives the evolution of dominance

Huber, Christian D., Durvasula, Arun, Hancock, Angela M., Lohmueller, Kirk E.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.39 MB

english, 2018

8

Using Genomic Data to Infer Historic Population Dynamics of Nonmodel Organisms

Beichman, Annabel C., Huerta-Sanchez, Emilia, Lohmueller, Kirk E.

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2018

Language:

english

File:

PDF, 567 KB

english, 2018

9

Understanding the Hidden Complexity of Latin American Population Isolates

Mooney, Jazlyn A., Huber, Christian D., Service, Susan, Sul, Jae Hoon, Marsden, Clare D., Zhang, Zhongyang, Sabatti, Chiara, Ruiz-Linares, Andrés, Bedoya, Gabriel, Freimer, Nelson, Lohmueller, Kirk E.

Journal:

The American Journal of Human Genetics

Year:

2018

Language:

english

File:

PDF, 2.51 MB

english, 2018

10

Estimation of allele frequency and association mapping using next-generation sequencing data

Su Yeon Kim, Kirk E Lohmueller, Anders Albrechtsen, Yingrui Li, Thorfinn Korneliussen, Geng Tian, Niels Grarup, Tao Jiang, Gitte Andersen, Daniel Witte, Torben Jorgensen, Torben Hansen, Oluf Pedersen,

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 523 KB

english, 2011

11

The Impact of Population Demography and Selection on the Genetic Architecture of Complex Traits

Lohmueller, Kirk E., Williams, Scott M.

Journal:

Year:

2014

Language:

english

File:

PDF, 1020 KB

english, 2014

12

RADseq data reveal ancient, but not pervasive, introgression between Californian tree and scrub oak species ( Quercus sect. Quercus : Fagaceae)

Kim, Bernard Y., Xinzeng, Wei, Fitz-Gibbon, Sorel, Lohmueller, Kirk E., Ortego, Joaquín, Gugger, Paul F., Sork, Victoria L.

Journal:

Molecular Ecology

Year:

2018

Language:

english

File:

PDF, 947 KB

english, 2018

13

Methods for High-Density Admixture Mapping of Disease Genes

Nick Patterson, Neil Hattangadi, Barton Lane, Kirk E. Lohmueller, David A. Hafler, Jorge R. Oksenberg, Stephen L. Hauser, Michael W. Smith, Stephen J. O’Brien, David Altshuler, Mark J. Daly, David Rei

Journal:

The American Journal of Human Genetics

Year:

2004

Language:

english

File:

PDF, 1.25 MB

english, 2004

14

Identification and characterization of constrained non-exonic bases lacking predictive epigenomic and transcription factor binding annotations

Grujic, Olivera, Phung, Tanya N., Kwon, Soo Bin, Arneson, Adriana, Lee, Yuju, Lohmueller, Kirk E., Ernst, Jason

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.54 MB

2020

15

Sex-Averaged Recombination and Mutation Rates on the X Chromosome: A Comment on Labuda et al.

Kirk E. Lohmueller, Jeremiah D. Degenhardt, Alon Keinan

Journal:

The American Journal of Human Genetics

Year:

2010

Language:

english

File:

PDF, 148 KB

english, 2010

16

Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome

Lohmueller, Kirk E., Albrechtsen, Anders, Li, Yingrui, Kim, Su Yeon, Korneliussen, Thorfinn, Vinckenbosch, Nicolas, Tian, Geng, Huerta-Sanchez, Emilia, Feder, Alison F., Grarup, Niels, Jørgensen, Torb

Journal:

Year:

2011

Language:

english

File:

PDF, 516 KB

english, 2011

17

Leveraging ancestry to improve causal variant identification in exome sequencing for monogenic disorders

Brown, Robert, Lee, Hane, Eskin, Ascia, Kichaev, Gleb, Lohmueller, Kirk E, Reversade, Bruno, Nelson, Stanley F, Pasaniuc, Bogdan

Journal:

European Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 613 KB

english, 2015

18

Fitting the Balding–Nichols model to forensic databases

Rohlfs, Rori V., Aguiar, Vitor R.C., Lohmueller, Kirk E., Castro, Amanda M., Ferreira, Alessandro C.S., Almeida, Vanessa C.O., Louro, Iuri D., Nielsen, Rasmus

Journal:

Forensic Science International: Genetics

Year:

2015

Language:

english

File:

PDF, 477 KB

english, 2015

19

Determining the factors driving selective effects of new nonsynonymous mutations

Huber, Christian D., Kim, Bernard Y., Marsden, Clare D., Lohmueller, Kirk E.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

20

Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome

Boyko, Adam R., Williamson, Scott H., Indap, Amit R., Degenhardt, Jeremiah D., Hernandez, Ryan D., Lohmueller, Kirk E., Adams, Mark D., Schmidt, Steffen, Sninsky, John J., Sunyaev, Shamil R., White, T

Journal:

Year:

2008

Language:

english

File:

PDF, 409 KB

english, 2008

21

The Impact of Recessive Deleterious Variation on Signals of Adaptive Introgression in Human Populations

Zhang, Xinjun, Kim, Bernard, Lohmueller, Kirk E., Huerta-SÃ¡nchez, Emilia

Journal:

Year:

2020

File:

PDF, 2.44 MB

2020

22

A Model-Based Approach for Identifying Signatures of Ancient Balancing Selection in Genetic Data

DeGiorgio, Michael, Lohmueller, Kirk E., Nielsen, Rasmus, Akey, Joshua M.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.05 MB

english, 2014

23

Natural Selection Reduced Diversity on Human Y Chromosomes

Wilson Sayres, Melissa A., Lohmueller, Kirk E., Nielsen, Rasmus, Payseur, Bret A.

Journal:

Year:

2014

Language:

english

File:

PDF, 362 KB

english, 2014

24

Growth factor gene IGF1 is associated with bill size in the black-bellied seedcracker Pyrenestes ostrinus

vonHoldt, Bridgett M., Kartzinel, Rebecca Y., Huber, Christian D., Le Underwood, Vinh, Zhen, Ying, Ruegg, Kristen, Lohmueller, Kirk E., Smith, Thomas B.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.01 MB

english, 2018

25

Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction

Robinson, Jacqueline A., Räikkönen, Jannikke, Vucetich, Leah M., Vucetich, John A., Peterson, Rolf O., Lohmueller, Kirk E., Wayne, Robert K.

Journal:

Science Advances

Year:

2019

File:

PDF, 2.70 MB

2019

26

Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs

Marsden, Clare D., Ortega-Del Vecchyo, Diego, O’Brien, Dennis P., Taylor, Jeremy F., Ramirez, Oscar, Vilà, Carles, Marques-Bonet, Tomas, Schnabel, Robert D., Wayne, Robert K., Lohmueller, Kirk E.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 908 KB

english, 2015

27

Population-Specific Genetic and Expression Differentiation in Europeans

Jiang, Xueyuan, Assis, Raquel, Lohmueller, Kirk

Journal:

Genome Biology and Evolution

Year:

2020

File:

PDF, 415 KB

2020

28

Greater strength of selection and higher proportion of beneficial amino acid changing mutations in humans compared with mice and Drosophila melanogaster

Zhen, Ying, Huber, Christian D., Davies, Robert W., Lohmueller, Kirk E.

Journal:

Genome Research

Year:

2021

File:

PDF, 1.55 MB

2021

29

Purging of Strongly Deleterious Mutations Explains Long-Term Persistence and Absence of Inbreeding Depression in Island Foxes

Robinson, Jacqueline A., Brown, Caitlin, Kim, Bernard Y., Lohmueller, Kirk E., Wayne, Robert K.

Journal:

Current Biology

Year:

2018

Language:

english

File:

PDF, 9.53 MB

english, 2018

30

Whole-Exome Sequencing of 2,000 Danish Individuals and the Role of Rare Coding Variants in Type 2 Diabetes

Lohmueller, Kirk E., Sparsø, Thomas, Li, Qibin, Andersson, Ehm, Korneliussen, Thorfinn, Albrechtsen, Anders, Banasik, Karina, Grarup, Niels, Hallgrimsdottir, Ingileif, Kiil, Kristoffer, Kilpeläinen, T

Journal:

The American Journal of Human Genetics

Year:

2014

Language:

english

File:

PDF, 50 KB

english, 2014

31

Analysis of allelic drop-out using the Identifiler® and PowerPlex® 16 forensic STR typing systems

Lohmueller, Kirk E., Rudin, Norah, Inman, Keith

Journal:

Forensic Science International: Genetics

Year:

2014

Language:

english

File:

PDF, 850 KB

english, 2014

32

Genomic Flatlining in the Endangered Island Fox

Robinson, Jacqueline A., Ortega-Del Vecchyo, Diego, Fan, Zhenxin, Kim, Bernard Y., vonHoldt, Bridgett M., Marsden, Clare D., Lohmueller, Kirk E., Wayne, Robert K.

Journal:

Current Biology

Year:

2016

Language:

english

File:

PDF, 5.44 MB

english, 2016

33

Population genetic models of GERP scores suggest pervasive turnover of constrained sites across mammalian evolution

Huber, Christian D., Kim, Bernard Y., Lohmueller, Kirk E., Gojobori, Takashi

Journal:

Year:

2020

File:

PDF, 4.07 MB

2020

34

Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction

Robinson, Jacqueline A., Räikkönen, Jannikke, Vucetich, Leah M., Vucetich, John A., Peterson, Rolf O., Lohmueller, Kirk E., Wayne, Robert K.

Journal:

Science Advances

Year:

2019

Language:

english

File:

PDF, 2.70 MB

english, 2019

35

Testing whether stutter and low-level DNA peaks are additive

Buckleton, John S., Lohmueller, Kirk E., Inman, Keith, Cheng, Kevin, Curran, James M., Pugh, Simone N., Bright, Jo-Anne, Taylor, Duncan A.

Journal:

Forensic Science International: Genetics

Year:

2019

Language:

english

File:

PDF, 718 KB

english, 2019

36

Graydon et al. provide no new evidence that forensic STR loci are functional

Kirk E. Lohmueller

Journal:

Forensic Science International: Genetics

Year:

2010

Language:

english

File:

PDF, 72 KB

english, 2010

37

Molecular evolution in small steps under prevailing negative selection – A nearly-universal rule of codon substitution

Chen, Qingjian, Lan, Ao, Shen, Xu, Wu, Chung-I, Lohmueller, Kirk

Journal:

Genome Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 1.12 MB

english, 2019

38

Lab Retriever: a software tool for calculating likelihood ratios incorporating a probability of drop-out for forensic DNA profiles

Inman, Keith, Rudin, Norah, Cheng, Ken, Robinson, Chris, Kirschner, Adam, Inman-Semerau, Luke, Lohmueller, Kirk E.

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 985 KB

english, 2015

39

Ancestry-specific recent effective population size in the Americas

Browning, Sharon R., Browning, Brian L., Daviglus, Martha L., Durazo-Arvizu, Ramon A., Schneiderman, Neil, Kaplan, Robert C., Laurie, Cathy C., Lohmueller, Kirk E.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.55 MB

english, 2018

40

Deleterious variation shapes the genomic landscape of introgression

Kim, Bernard Y., Huber, Christian D., Lohmueller, Kirk E., Schierup, Mikkel H.

Journal:

Year:

2018

Language:

english

File:

PDF, 10.85 MB

english, 2018

41

Calculating the Weight of Evidence in Low-Template Forensic DNA Casework

Lohmueller, Kirk E., Rudin, Norah

Journal:

Journal of Forensic Sciences

Year:

2013

Language:

english

File:

PDF, 142 KB

english, 2013

42

The distribution of deleterious genetic variation in human populations

Lohmueller, Kirk E

Journal:

Current Opinion in Genetics & Development

Year:

2014

Language:

english

File:

PDF, 457 KB

english, 2014

43

Whole-Exome Sequencing of 2,000 Danish Individuals and the Role of Rare Coding Variants in Type 2 Diabetes

Lohmueller, Kirk E., Sparsø, Thomas, Li, Qibin, Andersson, Ehm, Korneliussen, Thorfinn, Albrechtsen, Anders, Banasik, Karina, Grarup, Niels, Hallgrimsdottir, Ingileif, Kiil, Kristoffer, Kilpeläinen, T

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 476 KB

english, 2013

44

Comparison of Single Genome and Allele Frequency Data Reveals Discordant Demographic Histories

Beichman, Annabel C., Phung, Tanya N., Lohmueller, Kirk E.

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 2.42 MB

english, 2017

45

Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease

Lohmueller, Kirk E., Pearce, Celeste L., Pike, Malcolm, Lander, Eric S., Hirschhorn, Joel N.

Journal:

Nature Genetics

Year:

2003

Language:

english

File:

PDF, 111 KB

english, 2003

46

An assessment of the information content of likelihood ratios derived from complex mixtures

Marsden, Clare D., Rudin, Norah, Inman, Keith, Lohmueller, Kirk E.

Journal:

Forensic Science International: Genetics

Year:

2016

Language:

english

File:

PDF, 330 KB

english, 2016

47

Inference of the Distribution of Selection Coefficients for New Nonsynonymous Mutations Using Large Samples

Kim, Bernard Y., Huber, Christian D., Lohmueller, Kirk E.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.13 MB

english, 2017

48

Variants Associated with Common Disease Are Not Unusually Differentiated in Frequency across Populations

Kirk E. Lohmueller, Matthew M. Mauney, David Reich, John M. Braverman

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 97 KB

english, 2006

49

Proportionally more deleterious genetic variation in European than in African populations

Lohmueller, Kirk E., Indap, Amit R., Schmidt, Steffen, Boyko, Adam R., Hernandez, Ryan D., Hubisz, Melissa J., Sninsky, John J., White, Thomas J., Sunyaev, Shamil R., Nielsen, Rasmus

Journal:

Year:

2008

Language:

english

File:

PDF, 302 KB

english, 2008

50

A comprehensive review of genetic association studies

Hirschhorn, Joel N, Lohmueller, Kirk, Byrne, Edward, Hirschhorn, Kurt

Journal:

Genetics in Medicine

Year:

2002

Language:

english

File:

PDF, 161 KB

english, 2002

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